Prénom Nom
Fonction
I'm a paragraph. I'm connected to your collection through a dataset. To update me, go to the Data Manager. The Data Manager is where you store data to use in your site pages, or collect data from site visitors when they submit a form.
This collection in the Data Manager is already set up with some fields and content. To customize it with your own content, you can import a CSV file or simply edit the placeholder text. You can also add more fields which you can connect to other page elements so the content displays on your published site. Remember to sync the collection so your content is live! You can add as many new collections as you need to store or collect data.
Prénom Nom
Fonction
I'm a paragraph. I'm connected to your collection through a dataset. To update me, go to the Data Manager. The Data Manager is where you store data to use in your site pages, or collect data from site visitors when they submit a form.
This collection in the Data Manager is already set up with some fields and content. To customize it with your own content, you can import a CSV file or simply edit the placeholder text. You can also add more fields which you can connect to other page elements so the content displays on your published site. Remember to sync the collection so your content is live! You can add as many new collections as you need to store or collect data.
Prénom Nom
Fonction
I'm a paragraph. I'm connected to your collection through a dataset. To update me, go to the Data Manager. The Data Manager is where you store data to use in your site pages, or collect data from site visitors when they submit a form.
This collection in the Data Manager is already set up with some fields and content. To customize it with your own content, you can import a CSV file or simply edit the placeholder text. You can also add more fields which you can connect to other page elements so the content displays on your published site. Remember to sync the collection so your content is live! You can add as many new collections as you need to store or collect data.
Prénom Nom
Fonction
I'm a paragraph. I'm connected to your collection through a dataset. To update me, go to the Data Manager. The Data Manager is where you store data to use in your site pages, or collect data from site visitors when they submit a form.
This collection in the Data Manager is already set up with some fields and content. To customize it with your own content, you can import a CSV file or simply edit the placeholder text. You can also add more fields which you can connect to other page elements so the content displays on your published site. Remember to sync the collection so your content is live! You can add as many new collections as you need to store or collect data.
Prénom Nom
Fonction
I'm a paragraph. I'm connected to your collection through a dataset. To update me, go to the Data Manager. The Data Manager is where you store data to use in your site pages, or collect data from site visitors when they submit a form.
This collection in the Data Manager is already set up with some fields and content. To customize it with your own content, you can import a CSV file or simply edit the placeholder text. You can also add more fields which you can connect to other page elements so the content displays on your published site. Remember to sync the collection so your content is live! You can add as many new collections as you need to store or collect data.
Prénom Nom
Fonction
I'm a paragraph. I'm connected to your collection through a dataset. To update me, go to the Data Manager. The Data Manager is where you store data to use in your site pages, or collect data from site visitors when they submit a form.
This collection in the Data Manager is already set up with some fields and content. To customize it with your own content, you can import a CSV file or simply edit the placeholder text. You can also add more fields which you can connect to other page elements so the content displays on your published site. Remember to sync the collection so your content is live! You can add as many new collections as you need to store or collect data.
Prénom Nom
Fonction
I'm a paragraph. I'm connected to your collection through a dataset. To update me, go to the Data Manager. The Data Manager is where you store data to use in your site pages, or collect data from site visitors when they submit a form.
This collection in the Data Manager is already set up with some fields and content. To customize it with your own content, you can import a CSV file or simply edit the placeholder text. You can also add more fields which you can connect to other page elements so the content displays on your published site. Remember to sync the collection so your content is live! You can add as many new collections as you need to store or collect data.
Les objectifs de la plateforme sont de proposer des solutions bioinformatiques pour répondre aux besoins des utilisateurs et collaborateurs mais aussi de développer de nouveaux outils et environnements pour l’analyse informatisée des données de la biologie et particulièrement pour l’étude des génomes et de la diversité des espèces.
Notre expertise la plus ancienne porte sur l’annotation des génomes. Nous avons ainsi contribué au développement des logiciels EuGène, FrameD/FrameDP (collaboration Thomas Schiex, MIAT) pour l’annotation structurale des génomes. Ces dernières années, nous avons formé de nombreux collègues bioinformaticiens à leur utilisation.
Suite à l’assemblage, l’annotation structurale et fonctionnelle des génomes, nous maintenons sur le long terme plusieurs portails génomes, aussi bien pour des symbiotes, des pathogènes que des plantes (la légumineuse modèle Medicago truncatula, Tournesol, Rose, etc.).
Au niveau post-génomique, nous développons des environnements d’analyses intégratifs et des bases de connaissances (Legoo, EffectorK, etc.) pour intégrer des données hétérogènes haut-débit et/ou des connaissances.
Nous développons actuellement un environnement pour l’étude de la diversité des espèces cultivés à travers la construction et l’exploitation des catalogues d’allèles (Atlas).
Au-delà de nos développements nous proposons des protocoles d’analyses pour les études épigénétiques chez les plantes et les bactéries, les analyses transcriptomiques, les analyses de diversités SNP, l’annotation fonctionnelle des protéines, etc.
Notre plan de gestion des données de séquence exploite l’environnement Archive que nous développons depuis une décennie. Archive nous permet de collecter données et metadonnées au plus près de la production afin de gérer le cycle de vie de la données, de l’acquisition jusqu’à la publication (dans les bases de données publiques ou en générant un doi Archive).
Au niveau technologique, nos projets de développement récents sont basés sur l’architecture ‘Big data’ Apache Spark qui unifie de nombreuses méthodes d’analyses des données, le calcul distribué et le couplage à des données organisées dans des lacs de données. Notre cluster de calcul Spark de 1152 HT est également utilisable en mode SGE.
Nos publications/contributions
Nos développements et nos financements
