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24 chemin de Borde Rouge
31326 Castanet-Tolosan
Sunflower, Orobanche, Mildew
Stéphane Muños
Team Leader - Research Engineer
SPI team
RESEARCH SUBJECTS
Resistance to Orobanche cumana, the sunflower broomrape
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Mapping and cloning of total and quantitative resistances to the most virulent races of broomrape.
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Physiological characterization of the interaction between sunflower and O. cumana
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Measurement of gene expression during the first stages of the interaction
TRAINING
I obtained my PhD in 2002 at the University of Sciences in Montpellier (France). I worked in Molecular Physiology on the regulation of root nitrate transporters in Arabidopsis thaliana (BPMP, INRA Montpellier, A. Gojon's team). I joined the GAFL unit (INRA d'Avignon, France, M. Causse's team) in 2003 where I worked on the genetic basis of tomato fruit quality for 8 years. I joined the LIPM (INRA Toulouse, France) in 2011. I have acquired an expertise in genetics and genomics for the characterization of traits with agronomic interest. I coordinate the projects on sunflower resistance to broomrape (O. cumana), a parasitic plant that reduces yields in Europe and Asia.
24 chemin de Borde Rouge
31326 Castanet-Tolosan
Phone: +33 5 61 28 54 58
Molecular biology, genomics, Helianthus , Orobanche, Plasmopara halstedii
Alexandra Dejean-Legendre
Research Technician
SPI Team
RESEARCH SUBJECTS
Genotyping and molecular characterization of genes involved in the resistance to biotic stresses in sunflower (Orobanche cumana and mildew).
TRAINING
I am a research technician, an expert in molecular biology. I obtained my assistant engineer diploma in plant biotechnology, specializing in Plant Genetic Improvement, in 2008. I started in research in the Laboratory of Genomics and Fruit Biotechnology, where I was able to acquire technical knowledge in several fields (molecular biology, microscopy, proteomics…). I continued to gain professional experience working in a water analysis laboratory, this time focusing on water chemistry. I was then recruited in 2012 at INRAE, first as a technical assistant; then, with the experience acquired, I was able to pass the internal competitive examinations in order to be a research technician today. I am currently working within the Sunflower Pests Interactions team, led by Stéphane Muños. My main activities concern genotyping by molecular method, as well as genome analysis by bioinformatics. I contribute to many team projects, including the International Consortium of Sunflower Genomics (ICSG).
COMMITTEE MEMBER
I'm an elected member of the CDL, representing the ITA college. I'm a member of the LIPME facilities committee. Recently, I was asked by the Management to take part in a working group on Quality of Life at Work (QWL).
24 chemin de Borde Rouge
31326 Castanet-Tolosan
Sunflower, O. cumana, parasitic plant, interaction, biochemistry, cytology
Nathalie Vrielynck
Engineer
SPI Team
RESEARCH SUBJECTS
Molecular and cellular Characterization of sunflower resistance to Orobanche cumana.
TRAINING
I started my career at the CNRS as an assistant engineer in the Molecular and Cellular Pharmacology laboratory at Sophia Antipolis. I was involved in the cloning and biochemical characterization of novel mammalian phospholipases A2. I then joined the Biochemistry of Cellular and Molecular Regulatory Signals laboratory in Paris to work on the structure/function relationship of the HSC70 chaperone protein.
In 2003, I was recruited by INRA as a research engineer at the Institut Jean-Pierre Bourgin. First I was in charge of a technical platform dedicated to the expression of recombinant proteins. Between 2012 and 2016, I completed a doctoral thesis on the formation of double-strand breaks during meiosis in the plant model Arabidopsis thaliana. In 2019, I started a new project on the identification by a reverse genetic approach of new genes involved in meiotic recombination in this same species.
In 2024, I joined the SPI team at LIPME in Toulouse to work on the molecular and cellular characterization of the interaction between sunflower and the parasitic plant Orobanche cumana in order to develop new tools for eradicating this pathogen.
SCIENTIFIC PRODUCTION
-Chen HW, Yeh HY, Chang CC, Kuo WC, Lin SW, Vrielynck N, Grelon M, Chan NL, Chi P. (2024) Biochemical characterization of the meiosis-essential yet evolutionarily divergent topoisomerase VIB-like protein MTOPVIB from Arabidopsis thaliana. Nucleic Acids Res.
-Vrielynck N, Peuch M, Durand S, Lian Q, Chambon A, Hurel A, Guérin J, Guérois R, Mercier R, Grelon M, Mézard C. (2023) SCEP1 and SCEP2 are two new components of the synaptonemal complex central element. Nat Plants.
-Simon M, Durand S, Ricou A, Vrielynck N, Mayjonade B, Gouzy J, Boyer R, Roux F, Camilleri C, Budar F (2022) APOK3, a pollen killer antidote in Arabidopsis thaliana. Genetics.
-Vrielynck N, Schneider K, Rodriguez M, Sims J, Chambon A, Hurel A, De Muyt A, Ronceret A, Krsicka O, Mézard C, Schlögelhofer P, Grelon M. (2021) Conservation and divergence of meiotic DNA double strand break forming mechanisms in Arabidopsis thaliana. Nucleic Acids Res.
-Hurel A, Phillips D, Vrielynck N, Mézard C, Grelon M, Christophorou N (2018) A cytological approach to studying meiotic recombination and chromosome dynamics in Arabidopsis thaliana male meiocytes in three dimensions. Plant J.
-Robert T,Vrielynck N, Mézard C, de Massy B, Grelon M. (2016) A new light on the meiotic DSB catalytic complex. Semin Cell Dev Biol.
-Vrielynck N, Chambon A, Vezon D, Pereira L, Chelysheva L, De Muyt A, Mézard C, Mayer C, Grelon M. (2016) A DNA topoisomerase VI-like complex initiates meiotic recombination. Science.
-Haïli N, Planchard N, Arnal N, Quadrado M, Vrielynck N, Dahan J, des Francs-Small CC, Mireau H (2016) The MTL1 Pentatricopeptide Repeat Protein Is Required for Both Translation and Splicing of the Mitochondrial NADH DEHYDROGENASE SUBUNIT7 mRNA in Arabidopsis. Plant Physiol.
-Haïli N, Arnal N, Quadrado M, Amiar S, Tcherkez G, Dahan J, Briozzo P, Colas des Francs-Small C, Vrielynck N, Mireau H (2013) The pentatricopeptide repeat MTSF1 protein stabilizes the nad4 mRNA in Arabidopsis mitochondria. Nucleic Acids Res.
-Crismani W, Portemer V, Froger N, Chelysheva L, Horlow C, Vrielynck N, Mercier R. (2013) MCM8 is required for a pathway of meiotic double-strand break repair independent of DMC1 in Arabidopsis thaliana. PLoS Genet.
-Chelysheva L, Vezon D, Chambon A, Gendrot G, Pereira L, Lemhemdi A, Vrielynck N, Le Guin S, Novatchkova M, Grelon M. (2012) The Arabidopsis HEI10 is a new ZMM protein related to Zip3. PLoS Genet.
-Chelysheva L, Grandont L, Vrielynck N, le Guin S, Mercier R, Grelon M. (2010) An easy protocol for studying chromatin and recombination protein dynamics during Arabidopsis thaliana meiosis: immunodetection of cohesins, histones and MLH1. Cytogenet Genome Res.
-Duroc Y, Hiard S, Vrielynck N, Ragu S, Budar F. (2009) The Ogura sterility-inducing protein forms a large complex without interfering with the oxidative phosphorylation components in rapeseed mitochondria. Plant Mol Biol.
-Uyttewaal M, Arnal N, Quadrado M, Martin-Canadell A, Vrielynck N, Hiard S, Gherbi H, Bendahmane A, Budar F, Mireau H. (2008) Characterization of Raphanus sativus pentatricopeptide repeat proteins encoded by the fertility restorer locus for Ogura cytoplasmic male sterility. Plant Cell.
-Vignard J, Siwiec T, Chelysheva L, Vrielynck N, Gonord F, Armstrong SJ, Schlögelhofer P, Mercier R (2007) The interplay of RecA-related proteins and the MND1-HOP2 complex during meiosis in Arabidopsis thaliana. PLoS Genet.
-Chelysheva L, Diallo S, Vezon D, Gendrot G, Vrielynck N, Belcram K, Rocques N, Márquez-Lema A, Bhatt AM, Horlow C, Mercier R, Mézard C, Grelon M (2005) AtREC8 and AtSCC3 are essential to the monopolar orientation of the kinetochores during meiosis. J Cell Sci.
-Velten, M, Vrielynck N, Chaffotte A. et Ladjimi M.M. (2002) Domain structure of the HSC70 cochaperone, HIP. J Biol Chem
-Cupillard, L., R. Mulherkar R, Gomez N, Kadam S, Valentin E, Lazdunski M, Lambeau G. (1999) Both group IB and group IIA secreted phospholipases A2 are natural ligands of the mouse 180-kDa M- type receptor. J Biol Chem
24 chemin de Borde Rouge
31326 Castanet-Tolosan
Helianthus annuus ; Orobanche cumana ; Phelipanche ramosa ; Verticilium dahliae
Thibault Roudaire
Post-doctoral researcher
SPI team
RESEARCH SUBJECTS
PlantAlliance Cotagene project: Control of the sunflower broomrape using agroecological and genetic tools
TRAINING
I began studying parasitic plants during my M2 internship in Philippe Delavault's lab at the Plant Biology and Pathology Laboratory in Nantes (now known as US2B). I worked on the ANR miPEPiTO project, which aimed to control broomrape development using micropeptides, focusing on haustorium formation. After obtaining my Master's degree in plant biology from Clermont Auvergne University in 2019, I took the competitive exams of the doctoral schools of Angers and Dijon before starting a Ph.D. in biochemistry and molecular biology at INRAE in Dijon. Under the supervision of Marie-Claire Héloir and Benoît Poinssot, I worked on the Plant2Pro VitiLYKs project, focusing on the functional characterization of grapevine immune receptors. The long-term objective of this research project was to improve the effectiveness of biocontrol products based on chitooligosaccharides. During my PhD, I gained solid knowledge of plant immunity and developed various skills in in vitro culture, genome editing, plant transformation, and protein-protein interactions. I defended my thesis in 2023 at the University of Burgundy and then moved to INRAE in Toulouse for my first post-doctoral position. In collaboration with Célia Seassau from the AGIR lab and Stéphane Muños from the LIPME lab, I am currently studying the effects of plant compounds on sunflower broomrape germination. Through this project, we aim to develop new control methods for this parasitic plant, which could reduce the phytosanitary pressure on new sunflower varieties resistant to O. cumana and enhance our understanding of this crop pest's development.
SCIENTIFIC PRODUCTIONS
-Brulé, D., Héloir, M.-C., Roudaire, T., Villette, J., Bonnet, S., Pascal, Y., et al. (2024). Increasing vineyard sustainability: innovating a targeted chitosan-derived biocontrol solution to induce grapevine resistance against downy and powdery mildews. Frontiers in Plant Science. doi: 10.3389/fpls.2024.1360254
-Roudaire, T., Marzari, T., Landry, D., Löffelhardt, B., Gust, A. A., Jermakow, A., et al. (2023). The grapevine LysM receptor-like kinase VvLYK5-1 recognizes chitin oligomers through its association with VvLYK1-1. Frontiers in Plant Science. doi: 10.3389/fpls.2023.1130782
-Roudaire, T., Héloir, M.-C., Wendehenne, D., Zadoroznyj, A., Dubrez, L., and Poinssot, B. (2021). Cross Kingdom Immunity: The Role of Immune Receptors and Downstream Signaling in Animal and Plant Cell Death. Frontiers in Immunology. doi: 10.3389/fimmu.2020.612452
CONNECTIONS
24 chemin de Borde Rouge
31326 Castanet-Tolosan
Helianthus annuus ; Orobanche cumana
Belén Fernández Melero
Post-doctoral researcher
SPI team
RESEARCH SUBJECTS
My work is based on the study of the interaction between sunflower and its parasitic plant Orobanche cumana, more commonly known as sunflower broomrape.
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Resistance genes identification
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Avirulence genes identification
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Resistant mechanisms characterization
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Diversity analysis
TRAINING
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2013-2017 Bachelor of Biochemistry. University of Córdoba
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2017-2018 Master on Biotechnology. University of Granada
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2019-2024 Doctorate on Agrarian, Food, Forestry and Sustainable Rural Development Engineering. University of Córdoba. “Genetic characterization of local populations of sunflower broomrape with higher virulence and new sources of genetic resistance in sunflower”
SCIENTIFIC PRODUCTIONS
-Fernández-Melero B, Martín-Sanz A, Del Moral L, Pérez-Vich B, Velasco L. A novel sunflower broomrape race with unusual virulence potentially caused by a mutation. Front Plant Sci. 2023 Oct 6;14:1236511. doi: 10.3389/fpls.2023.1236511. PMID: 37868306; PMCID: PMC10587594.
-Fernández-Melero B, Del Moral L, Todesco M, Rieseberg LH, Owens GL, Carrère S, Chabaud M, Muños S, Velasco L, Pérez-Vich B. Development and characterization of a new sunflower source of resistance to race G of Orobanche cumana Wallr. derived from Helianthus anomalus. Theor Appl Genet. 2024 Feb 22;137(3):56. doi: 10.1007/s00122-024-04558-4. PMID: 38386181; PMCID: PMC10884359.
RECENT FUNDING
Beneficiary of the grant PRE2018-084486 funded by MCIN/AEI/10.13039/501100011033 of the Spanish Ministry of Science and Innovation.
24 chemin de Borde Rouge
31326 Castanet-Tolosan
Sunflower, Orobanche cumana, Helianthus annuus, transcriptomics, phenotyping
Elena Dangla
Engineer
SPI Team
RESEARCH SUBJECTS
The STIGO ANR project: Transcriptomic analyses to identify candidate genes involved in the stimulation of Orobanche cumana seed germination.
TRAINING
After obtaining my Master's degree in Plant Biology in 2023 at the Paul Sabatier University in Toulouse (France), I joined the SPI team as an engineer for the private company Innolea in order to conduct transcriptomic analyses as part of the STIGO project. This project brings together five partners (public laboratories and a private company) with the aim of identifying candidate genes involved in the biosynthesis of germination-inducing molecules of broomrape seeds, an obligatory parasitic plant of sunflowers. In addition, sunflower root exudates and the receptors of inducer molecules in broomrape are being studied.
During my degree, I did a 6-month internship with the ECOGEN team of the LIPME on the subject of plant-plant interactions and, more specifically, competition between A. thaliana and the Poaceae Poa annua through the functional analysis of putative interactors of the ESC-1 gene (subject of M. Invernizzi's thesis). I also had a 2-month internship at the CEA of Cadarache to study guard cell signaling in A. thaliana in response to water stress using genetic and cell imaging approaches.
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2021-2023 Master's degree in plant biology and associated micro-organisms. University of Toulouse (France)
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2018-2021 Bachelor's degree in environmental biology and toxicology. University of Albi (France)
COLLABORATIONS
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INNOLEA SAS (https://innolea.fr/en/home/)
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ICSN Institut de Chimie des Substances Naturelles (https://icsn.cnrs.fr/en)
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US2B Unité en Sciences Biologiques et Biotechnologies (https://us2b.univ-nantes.fr/)
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IJPB Institut Jean-Pierre Bourgin (https://ijpb.versailles.inrae.fr/en/)
CONNECTIONS
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Presentation of the STIGO project at the 35th Carrefour de la Sélection du Tournesol 2024 https://www.terresinovia.fr/en/-/tournesol-le-carrefour-de-la-selection-seleopro-fait-le-point-sur-les-recherches
FORMER MEMBERS
Mireille Chabaud
Research Engineer
SPI Team
RESEARCH SUBJECTS
Search for new resistances to broomrape in wild sunflowers. Phenotypic and cytological characterization of resistance mechanisms.
TRAINING
I'm an agronomic engineer from the Higher National School of Agronomy in Montpellier (1983). I began my career in the seed company “les Graines Caillard” (France) with the use of in vitro culture at the service of vegetable breeders, then I pursued at “Biotechnica International Inc.” (Boston, USA) with the optimization of the genetic transformation of the lucerne. I was then recruited at INRA (1992) as a research engineer at LIPM in Thierry Huguet's team to work on the setting up of the transformation by Agrobacterium tumefaciens of the model legume Medicago truncatula. I conducted my doctoral thesis on this topic and I contributed to various aspects of M. truncatula transformation, including transformation by A. rhizogenes. I joined David Barker's group in 1998 to work on the study of arbuscular mycorrhizal symbiosis, and more particularly on cell dynamics approaches using confocal microscopy combined with fluorescent markers. This work led me to the development of the use of fluorescent calcium probes called “cameleon” to study calcium signal variations during the early stages of symbiotic interactions. In September 2017, I joined LIPM's Sunflower Genetics and Genomics team to work on sunflower root phenotyping, in particular during the interaction between sunflower and the parasitic plant Orobanche cumana.
24 chemin de Borde Rouge
31326 Castanet-Tolosan
Sunflower, Orobanche, phenotyping, cytology, image analysis
RECENT FUNDING
ResODiv project - Promosol funding-2021-2023: Exploiting the genetic diversity of the Helianthus genus to identify new resistances to Orobanche cumana and to use them in pre-breeding
COLLABORATIONS
University of Nantes-Philippe Delavault
CSIC from Cordou (Spain)-Leonardo Velasco and Begoña Perez-Vich
COMMITTEE MEMBER
Member of the Scientific Advisory Board of the Agrobiosciences-Interactions and Biodiversity Research Federation (FR-AIB)
SCIENTIFIC PRODUCTION
Publications for the 2018-2021 period:
-Le Ru A., Ibarcq G., Boniface M.-C., Baussart A., Muños S. and M. Chabaud (2021).Image analysis for the automatic phenotyping of Orobanche cumana tubercles on sunflower roots. Plant Methods
-Duriez P., Vautrin S., Auriac, M-C, Balzerque J., Boniface M-C, Rousseaux J-C, Carrère S., Callot C., Cauet S., Chabaud M., Gentoux F., Lopez-Sendon M., Paris C., Pégot-Espagnet P., Pérez-Vich B., Velasco L., Bergès H., Piquemal J. and Munos S. (2019) A receptor-like kinase enhances resistance to sunflower broomrape by preventing plan-plant interaction. Nature Plants, 5, 1211-1215.
-Chabaud M., Fournier J., Brichet L., Abdou-Pavy I., Imanishi L., Brottier L., Pirolles E., Hocher V., Franche C., Bogusz D., Wall L.G., Svistoonoff S., Gherbi H. and DG Barker (2019) Chitotetraose activates the fungal-dependent endosymbiotic signaling pathway in actinorhizal plant species. PlosOne https://doi.org/10.1371/journal.pone.0223149 October 10
-Russo G., Carotenuto G., Fiorilli V., Volpe V., Faccio A., Chabaud M., Bonfante P., Chiapello M., Van Damne D. and A. Genre (2019) T-Plate recruitment reveals endocytic dynamics at sites of symbiotic interface assembly in arbuscular mycorrhizal interactions. Frontiers in plant science, 10, article 1628.
-Fournier J, Imanishi L, Chabaud M, Abdou-Pavy I, Genre A, Brichet L, Lascano H, Munoz N, Vayssières A, Pirolles E, Brottier L, Gherbi H, Hocher V, Svistoonoff S, Barker D and Wall L.( 2018). Cell remodeling and subtilase gene expression in the actinorhizal plant Discaria trinervis highlight host orchestration of intercellular Frankia colonization. New Phytol 219: 1018-1030
-Kelner A, Leitao N, Chabaud M, Charpentier M and de Carvalho-Niebel F. (2018) Dual color sensors for simultaneous analysis of calcium signal dynamics in the nuclear and cytoplasmic compartments of plant cells. Frontiers in Plant Science. https://www.frontiersin.org/articles/10.3389/fpls.2018.00245
-Remblière C, Fournier J., de Carvalho-Niebel F., and Chabaud M. (2018) A simple Agrobacterium tumefaciens-mediated transformation method for rapid transgene expression in Medicago truncatula root hairs. Plant Cell Tissue and Organ Culture 132: 181-190
Marie-Claude Boniface
Research Technician
SPI team
RESEARCH SUBJECTS
Currently responsible of CRBT.
TRAINING
Agricultural BTS
24 Borde Rouge road
31326 Castanet-Tolosan
Biological Resource Center; Sunflower; pathology
RECENT FUNDING
Promosol
COLLABORATIONS
Private seeds partners ; LIPME ; CRB Pilier Plantes
COMMITTEE MEMBER
CDL member; Prevention Officer; welcome newcomers member
SCIENTIFIC PRODUCTION
-Terzic S.*; Boniface MC*; Marek L*; Alvarez D; Baumann K; Gavrilova V; Joita-Pacureanu M; Sujatha M; Valkova D; Velasco L; Hulke BS; Jocic S; Langlade N; Muños S; Rieseberg L; Seiler G; Vear F (2020) Gene banks for wild and cultivated sunflower genetic resources. OCL 27, 9.*co-premiers auteurs
-Duriez P., Vautrin S., Auriac M.C., Bazerque J., Boniface M.C., Rousseaux J.C., Carrere S., Callot C., Cauet S., Chabaud M., Gentoux F., Lopez-Sendon M., Paris C., Pegot-Espagnet P., Pérez-Vich B., Velasco L., Bergès H., Piquemal J., Muños S. (2019) A receptor-like kinase enhances sunflower resistance to Orobanche cumana. Nature Plants 5:1211–1215.
-Bonnafous, F., Fievet, G., Blanchet N., Boniface, M.C., Carrère, S., Gouzy,J., Legrand, L., Marage G., Bret-Mestries, E., Munos, S.; Pouilly, N., Vincourt, P., Langlade, N., Mangin, B. (2018) Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids. Theoretical and Applied Genetics 131:319-332.
-Mangin B., Bonnafous F., Blanchet N., Boniface M.C., Bret-Mestries E., Carrère S., Cottret L., Legrand L., Marage G., Pegot-Espagnet P., Muños S., Pouilly N., Vear F., Vincourt P. and Langlade N. (2017) Genomic prediction of sunflower hybrids oil content. Frontier in Plant Science 2017 Sep 21;8:1633. doi: 10.3389/fpls.2017.01633. eCollection 2017.
-Mangin B., Pouilly N., Boniface M.C., Langlade N., Vincourt P., Vear F., Muños S. 2017. Molecular diversity in sunflower populations maintained as genetic resources is affected by multiplication processes and breeding for major traits. Theoretical and Applied Genetics, 130: 1099-1112.
